Hein, Jotun: search on Z-Library

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1

BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC

Rahul Satija, Ádám Novák, István Miklós, Rune Lyngsø, Jotun Hein

Journal:

BMC Evolutionary Biology

Year:

2009

Language:

english

File:

PDF, 1.04 MB

english, 2009

2

Recent common ancestors of all present-day individuals

Chang, Joseph T., Donnelly, Peter, Wiuf, Carsten, Hein, Jotun, Slatkin, Montgomery, Ewens, W. J., Kingman, J. F. C.

Journal:

Advances in Applied Probability

Year:

1999

Language:

english

File:

PDF, 187 KB

english, 1999

3

[Methods in Enzymology] Volume 183 || [39] Unified approach to alignment and phylogenies

Year:

1990

Language:

english

File:

PDF, 1.12 MB

english, 1990

4

Human evolution: Pedigrees for all humanity

Journal:

Year:

2004

Language:

english

File:

PDF, 165 KB

english, 2004

5

An Algorithm Combining DNA and Protein Alignment

Journal:

Journal of Theoretical Biology

Year:

1994

File:

PDF, 205 KB

1994

6

Autocatalytic Sets and the Origin of Life

Hordijk, Wim, Hein, Jotun, Steel, Mike

Journal:

Year:

2010

Language:

english

File:

PDF, 159 KB

english, 2010

7

Reconstructing pedigrees: A combinatorial perspective

Mike Steel, Jotun Hein

Journal:

Journal of Theoretical Biology

Year:

2006

Language:

english

File:

PDF, 253 KB

english, 2006

8

Frnakenstein: multiple target inverse RNA folding

Rune B Lyngsø, James WJ Anderson, Elena Sizikova, Amarendra Badugu, Tomas Hyland, Jotun Hein

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 265 KB

english, 2012

9

An optimal algorithm to reconstruct trees from additive distance data

Journal:

Bulletin of Mathematical Biology

Year:

1989

Language:

english

File:

PDF, 358 KB

english, 1989

10

Reconstructing evolution of sequences subject to recombination using parsimony

Journal:

Mathematical Biosciences

Year:

1990

Language:

english

File:

PDF, 1.60 MB

english, 1990

11

How reliably can we predict the reliability of protein structure predictions?

István Miklós, Ádám Novák ', Balázs Dombai, Jotun Hein

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1007 KB

english, 2008

12

Phylogenetics. - Charles Semple and Mike Steel. 2003. Oxford University Press, New York. xiii + 239 pp. ISBN 0-19-850942-1. $90.00.

Song, Yun, Hein, Jotun

Journal:

Systematic Biology

Year:

2004

Language:

english

File:

PDF, 431 KB

english, 2004

13

A Molecular Clock Dates the Common Ancestor of European-type Porcine Reproductive and Respiratory Syndrome Virus at More Than 10 Years before the Emergence of Disease

Roald Forsberg, Martin B. Oleksiewicz, Anne-Mette Krabbe Petersen, Jotun Hein, Anette Bøtner, Torben Storgaard

Journal:

Year:

2001

Language:

english

File:

PDF, 124 KB

english, 2001

14

[Methods in Enzymology] Computer Methods for Macromolecular Sequence Analysis Volume 266 || [23] Combined DNA and protein alignment

Year:

1996

Language:

english

File:

PDF, 737 KB

english, 1996

15

Using biological networks to search for interacting loci in genome-wide association studies

Emily, Mathieu, Mailund, Thomas, Hein, Jotun, Schauser, Leif, Schierup, Mikkel Heide

Journal:

European Journal of Human Genetics

Year:

2009

Language:

english

File:

PDF, 224 KB

english, 2009

16

Recombination as a Point Process along Sequences

Carsten Wiuf, Jotun Hein

Journal:

Theoretical Population Biology

Year:

1999

Language:

english

File:

PDF, 268 KB

english, 1999

17

An investigation into irreducible autocatalytic sets and power law distributed catalysis

Hordijk, Wim, Hasenclever, Leonard, Gao, Jie, Mincheva, Dilyana, Hein, Jotun

Journal:

Natural Computing

Year:

2014

Language:

english

File:

PDF, 711 KB

english, 2014

18

Phylogeneticsby Charles Semple; Mike Steel

Review by: Yun S. Song and Jotun Hein

Journal:

Systematic Biology

Year:

2004

Language:

english

File:

PDF, 970 KB

english, 2004

19

Evolutionary analyses of base-pairing interactions in DNA and RNA secondary structures

Golden, Michael, Murrell, Ben, Martin, Darren, Pybus, Oliver G, Hein, Jotun, Pupko, Tal

Journal:

Molecular Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 9.71 MB

english, 2019

20

A tree · a window · a hill; generalization of nearest-neighbor interchange in phylogenetic optimization

David Sankoff, Yvon Abel, Jotun Hein

Journal:

Journal of Classification

Year:

1994

Language:

english

File:

PDF, 1.16 MB

english, 1994

21

A Bayesian Approach to the Evolution of Metabolic Networks on a Phylogeny

Mithani, Aziz, Preston, Gail M., Hein, Jotun, Regev, Aviv

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 5.88 MB

english, 2010

22

Discussion: Recent Common Ancestors of All Present-Day Individuals

Peter Donnelly, Carsten Wiuf, Jotun Hein, Montgomery Slatkin, W. J. Ewens and J. F. C. Kingman

Journal:

Advances in Applied Probability

Year:

1999

Language:

english

File:

PDF, 1.01 MB

english, 1999

23

On the complexity of comparing evolutionary trees

Jotun Hein, Tao Jiang, Lusheng Wang, Kaizhong Zhang

Journal:

Discrete Applied Mathematics

Year:

1996

Language:

english

File:

PDF, 1.06 MB

english, 1996

24

Genomic alignment

Jotun Hein, Jens Støvlæk

Journal:

Journal of Molecular Evolution

Year:

1994

Language:

english

File:

PDF, 513 KB

english, 1994

25

On the minimum number of recombination events in the evolutionary history of DNA sequences

Yun S. Song, Jotun Hein

Journal:

Journal of Mathematical Biology

Year:

2004

Language:

english

File:

PDF, 331 KB

english, 2004

26

Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model

Lunter, Gerton, Ponting, Chris P., Hein, Jotun

Journal:

PLoS Computational Biology

Year:

2006

Language:

english

File:

PDF, 544 KB

english, 2006

27

An optimal algorithm to reconstruct trees from additive distance data

Journal:

Bulletin of Mathematical Biology

Year:

1989

Language:

english

File:

PDF, 362 KB

english, 1989

28

A maximum-likelihood approach to analyzing nonoverlapping and overlapping reading frames

Jotun Hein, Jens Støvlbæk

Journal:

Journal of Molecular Evolution

Year:

1995

Language:

english

File:

PDF, 818 KB

english, 1995

29

Investigating selection on viruses: a statistical alignment approach

Saskia de Groot, Thomas Mailund, Gerton Lunter, Jotun Hein

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 516 KB

english, 2008

30

Dynamic and Physical Clustering of Gene Expression during Epidermal Barrier Formation in Differentiating Keratinocytes

Taylor, Jennifer M., Street, Teresa L., Hao, Lizhong, Copley, Richard, Taylor, Martin S., Hayden, Patrick J., Stolper, Gina, Mott, Richard, Hein, Jotun, Moffatt, Miriam F., Cookson, William O. C. M.,

Journal:

Year:

2009

Language:

english

File:

PDF, 475 KB

english, 2009

31

Sex-specific aspects of endogenous retroviral insertion and deletion

Patrick Gemmell,Jotun Hein,Aris Katzourakis

Journal:

BMC Evolutionary Biology

Year:

2013

Language:

english

File:

PDF, 238 KB

english, 2013

32

Detecting interacting genetic loci with effects on quantitative traits where the nature and order of the interaction are unknown

Joanna L. Davies, Jotun Hein, Chris C. Holmes

Journal:

Genetic Epidemiology

Year:

2010

Language:

english

File:

PDF, 284 KB

english, 2010

33

Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs

Herman, Joseph L, Novák, Ádám, Lyngsø, Rune, Szabó, Adrienn, Miklós, István, Hein, Jotun

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.33 MB

english, 2015

34

A simulation-based approach to statistical alignment

Levy Karin, Eli, Ashkenazy, Haim, Hein, Jotun, Pupko, Tal

Journal:

Systematic Biology

Year:

2018

Language:

english

File:

PDF, 1.31 MB

english, 2018

35

Protein Similarity Derived Solely from Molecular Dynamics

Biggin, Philip C., Lyngsø, Rune, Hein, Jotun, Münz, Márton

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 37 KB

english, 2010

36

[Lecture Notes in Computer Science] Combinatorial Pattern Matching Volume 1264 || On incremental computation of transitive closure and greedy alignment

Apostolico, Alberto, Hein, Jotun

Year:

1997

Language:

english

File:

PDF, 717 KB

english, 1997

37

A generative angular model of protein structure evolution

Golden, Michael, Garcia-Portugues, Eduardo, Sørensen, Michael, Mardia, Kanti V., Hamelryck, Thomas, Hein, Jotun

Journal:

Molecular Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 15.22 MB

english, 2017

38

The Genetic Diversity of European Type PRRSV Is Similar to That of the North American Type but Is Geographically Skewed within Europe

Roald Forsberg, Torben Storgaard, Henriette S. Nielsen, Martin B. Oleksiewicz, Paolo Cordioli, Giovanni Sala, Jotun Hein, Anette Bøtner

Journal:

Year:

2002

Language:

english

File:

PDF, 176 KB

english, 2002

39

Bayesian coestimation of phylogeny and sequence alignment

Gerton Lunter, István Miklós, Alexei Drummond, Ledet Jens Jensen, Jotun Hein

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 354 KB

english, 2005

40

Reticular alignment: A progressive corner-cutting method for multiple sequence alignment

Adrienn Szabó, Ádám Novák, István Miklós, Jotun Hein

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 723 KB

english, 2010

41

Book Reviews; Book Reviews;

Dearden, Peter, Song, Yun, Hein, Jotun

Journal:

Systematic Biology

Year:

2004

Language:

english

File:

PDF, 53 KB

english, 2004

42

The Role of Flexibility and Conformational Selection in the Binding Promiscuity of PDZ Domains

Münz, Márton, Hein, Jotun, Biggin, Philip C., Zhou, Huan-Xiang

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 968 KB

english, 2012

43

Opinion: The Icelandic Cancer Project – a population-wide approach to studying cancer

Rafnar, Thorunn, Thorlacius, Steinunn, Steingrimsson, Eirikur, Schierup, Mikkel H., Madsen, Jesper N., Eldon, Bjarki J., Jonsson, Thorvaldur, Hein, Jotun, Thorgeirsson, Snorri S., Calian, Violeta

Journal:

Nature Reviews Cancer

Year:

2004

Language:

english

File:

PDF, 154 KB

english, 2004

44

Orthologous endogenous retroviruses exhibit directional selection since the chimp-human split

Gemmell, Patrick, Hein, Jotun, Katzourakis, Aris

Journal:

Year:

2015

Language:

english

File:

PDF, 1.31 MB

english, 2015

45

Evolving stochastic context--free grammars for RNA secondary structure prediction

WJ Anderson, James, Tataru, Paula, Staines, Joe, Hein, Jotun, Lyngsø, Rune

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 718 KB

english, 2012

46

BOOK REVIEW

Journal:

Theoretical Population Biology

Year:

2000

Language:

english

File:

PDF, 68 KB

english, 2000

47

Discussion: Recent Common Ancestors of all Present-Day Individuals

Donnelly, Peter, Wiuf, Carsten, Hein, Jotun, Slatkin, Montgomery, Ewens, W. J., Kingman, J. F. C.

Journal:

Advances in Applied Probability

Year:

1999

Language:

english

File:

PDF, 101 KB

english, 1999

48

Tree measures and the number of segregating sites in time-structured population samples

Roald Forsberg, Alexei J Drummond, Jotun Hein

Journal:

Year:

2005

Language:

english

File:

PDF, 766 KB

english, 2005

49

A heuristic method to reconstruct the history of sequences subject to recombination

Journal:

Journal of Molecular Evolution

Year:

1993

Language:

english

File:

PDF, 845 KB

english, 1993

50

[Lecture Notes in Computer Science] Combinatorial Pattern Matching Volume 1264 || Direct construction of compact directed acyclic word graphs

Apostolico, Alberto, Hein, Jotun

Year:

1997

Language:

english

File:

PDF, 701 KB

english, 1997

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